HL_7XNX_005
3D structure
- PDB id
- 7XNX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UAACCA
- Length
- 6 nucleotides
- Bulged bases
- 7XNX|1|L1|C|72
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7XNX_005 not in the Motif Atlas
- Homologous match to HL_8C3A_002
- Geometric discrepancy: 0.0855
- The information below is about HL_8C3A_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_22523.2
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 13
Unit IDs
7XNX|1|L1|U|68
7XNX|1|L1|A|69
7XNX|1|L1|A|70
7XNX|1|L1|C|71
7XNX|1|L1|C|72
7XNX|1|L1|A|73
Current chains
- Chain L1
- 28S rRNA
Nearby chains
- Chain LL
- 60S ribosomal protein L13
- Chain LN
- 60S ribosomal protein L15
- Chain La
- 60S ribosomal protein L27
- Chain Li
- 60S ribosomal protein L36
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