HL_7XNX_056

3D structure

PDB id

7XNX (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

G(A2M)AGAAA(PSU)UC

Length

10 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7XNX_056 not in the Motif Atlas

Geometric match to HL_8KAL_008

Geometric discrepancy: 0.3435

The information below is about HL_8KAL_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7XNX|1|L1|G|3722
7XNX|1|L1|A2M|3723
7XNX|1|L1|A|3724
7XNX|1|L1|G|3725
7XNX|1|L1|A|3726
7XNX|1|L1|A|3727
7XNX|1|L1|A|3728
7XNX|1|L1|PSU|3729
7XNX|1|L1|U|3730
7XNX|1|L1|C|3731

Current chains

Chain L1

28S rRNA

Nearby chains

Chain Li

60S ribosomal protein L36

Chain Lo

60S ribosomal protein L36a