HL_7XNX_059

3D structure

PDB id

7XNX (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

7XNX|1|L1|A|3876, 7XNX|1|L1|A|3877, 7XNX|1|L1|C|3878

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7XNX_059 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.0589

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

7XNX|1|L1|G|3873
7XNX|1|L1|G|3874
7XNX|1|L1|G|3875
7XNX|1|L1|A|3876
7XNX|1|L1|A|3877
7XNX|1|L1|C|3878
7XNX|1|L1|G|3879
7XNX|1|L1|G|3880
7XNX|1|L1|G|3881
7XNX|1|L1|C|3882

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain Le

60S ribosomal protein L32