HL_7XNX_060

3D structure

PDB id

7XNX (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUGGGAGGCCCGGGCCGCCGGUGAAAUACCACU

Length

33 nucleotides

Bulged bases

7XNX|1|L1|G|3970, 7XNX|1|L1|G|4035, 7XNX|1|L1|C|4037, 7XNX|1|L1|C|4038, 7XNX|1|L1|U|4044, 7XNX|1|L1|A|4046, 7XNX|1|L1|A|4047, 7XNX|1|L1|A|4053, 7XNX|1|L1|C|4054

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7XNX|1|L1|G|3967
7XNX|1|L1|U|3968
7XNX|1|L1|G|3969
7XNX|1|L1|G|3970
7XNX|1|L1|G|3971
7XNX|1|L1|A|3972
7XNX|1|L1|G|3973
7XNX|1|L1|G|3974
7XNX|1|L1|C|3975
7XNX|1|L1|C|3976
7XNX|1|L1|C|3977
7XNX|1|L1|G|4034
7XNX|1|L1|G|4035
7XNX|1|L1|G|4036
7XNX|1|L1|C|4037
7XNX|1|L1|C|4038
7XNX|1|L1|G|4039
7XNX|1|L1|C|4040
7XNX|1|L1|C|4041
7XNX|1|L1|G|4042
7XNX|1|L1|G|4043
7XNX|1|L1|U|4044
7XNX|1|L1|G|4045
7XNX|1|L1|A|4046
7XNX|1|L1|A|4047
7XNX|1|L1|A|4048
7XNX|1|L1|U|4049
7XNX|1|L1|A|4050
7XNX|1|L1|C|4051
7XNX|1|L1|C|4052
7XNX|1|L1|A|4053
7XNX|1|L1|C|4054
7XNX|1|L1|U|4055

Current chains

Chain L1

28S rRNA

Nearby chains

Chain CC

Transfer RNA; tRNA