HL_7XNX_076

3D structure

PDB id

7XNX (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

7XNX|1|L1|G|4694, 7XNX|1|L1|C|4698

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7XNX_076 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.0536

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

7XNX|1|L1|C|4688
7XNX|1|L1|U|4689
7XNX|1|L1|G|4690
7XNX|1|L1|A|4691
7XNX|1|L1|A|4692
7XNX|1|L1|C|4693
7XNX|1|L1|G|4694
7XNX|1|L1|C|4695
7XNX|1|L1|C|4696
7XNX|1|L1|U|4697
7XNX|1|L1|C|4698
7XNX|1|L1|U|4699
7XNX|1|L1|A|4700
7XNX|1|L1|A|4701
7XNX|1|L1|G|4702

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LH

60S ribosomal protein L9

Chain LO

60S ribosomal protein L13a

Chain Lm

Ubiquitin-60S ribosomal protein L40