HL_7XNX_079

3D structure

PDB id

7XNX (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

7XNX|1|L1|U|4976

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7XNX_079 not in the Motif Atlas

Homologous match to HL_8C3A_071

Geometric discrepancy: 0.0905

The information below is about HL_8C3A_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

7XNX|1|L1|G|4975
7XNX|1|L1|U|4976
7XNX|1|L1|A|4977
7XNX|1|L1|G|4978
7XNX|1|L1|A|4979
7XNX|1|L1|C|4980
7XNX|1|L1|G|4981
7XNX|1|L1|A|4982
7XNX|1|L1|C|4983

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LP

60S ribosomal protein L17