HL_7XNX_090

3D structure

PDB id

7XNX (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CCUUCGCGGG

Length

10 nucleotides

Bulged bases

7XNX|1|S2|U|197, 7XNX|1|S2|C|201

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7XNX_090 not in the Motif Atlas

Geometric match to HL_2ZNI_001

Geometric discrepancy: 0.2951

The information below is about HL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

7XNX|1|S2|C|195
7XNX|1|S2|C|196
7XNX|1|S2|U|197
7XNX|1|S2|U|198
7XNX|1|S2|C|199
7XNX|1|S2|G|200
7XNX|1|S2|C|201
7XNX|1|S2|G|202
7XNX|1|S2|G|203
7XNX|1|S2|G|204

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SI

40S ribosomal protein S8