HL_7XNX_092

3D structure

PDB id

7XNX (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CCCCCGUG

Length

8 nucleotides

Bulged bases

7XNX|1|S2|C|324, 7XNX|1|S2|C|325, 7XNX|1|S2|C|326

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7XNX_092 not in the Motif Atlas

Geometric match to HL_8UO6_007

Geometric discrepancy: 0.3327

The information below is about HL_8UO6_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.2

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

7XNX|1|S2|C|322
7XNX|1|S2|C|323
7XNX|1|S2|C|324
7XNX|1|S2|C|325
7XNX|1|S2|C|326
7XNX|1|S2|G|327
7XNX|1|S2|U|328
7XNX|1|S2|G|329

Current chains

Chain S2

18S rRNA

Nearby chains

Chain LW

60S ribosomal protein L24

Chain SG

40S ribosomal protein S6