HL_7XNX_113

3D structure

PDB id

7XNX (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AGCGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7XNX_113 not in the Motif Atlas

Homologous match to HL_4V88_214

Geometric discrepancy: 0.081

The information below is about HL_4V88_214

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7XNX|1|S2|A|1353
7XNX|1|S2|G|1354
7XNX|1|S2|C|1355
7XNX|1|S2|G|1356
7XNX|1|S2|A|1357
7XNX|1|S2|U|1358

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SA

40S ribosomal protein SA

Chain SC

40S ribosomal protein S2