HL_7XNX_115

3D structure

PDB id

7XNX (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CCCCGAGCG

Length

9 nucleotides

Bulged bases

7XNX|1|S2|C|1423

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7XNX_115 not in the Motif Atlas

Geometric match to HL_5J7L_018

Geometric discrepancy: 0.3665

The information below is about HL_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37344.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

7XNX|1|S2|C|1416
7XNX|1|S2|C|1417
7XNX|1|S2|C|1418
7XNX|1|S2|C|1419
7XNX|1|S2|G|1420
7XNX|1|S2|A|1421
7XNX|1|S2|G|1422
7XNX|1|S2|C|1423
7XNX|1|S2|G|1424

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SQ

40S ribosomal protein S16

Chain ST

40S ribosomal protein S19