HL_7XNX_120

3D structure

PDB id

7XNX (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGUGCGCCCACGG*C

Length

14 nucleotides

Bulged bases

7XNX|1|S2|G|1771, 7XNX|1|S2|G|1764, 7XNX|1|S2|C|1765, 7XNX|1|S2|C|1766, 7XNX|1|S2|C|1767, 7XNX|1|S2|A|1768, 7XNX|1|S2|C|1769, 7XNX|1|S2|G|1770, 7XNX|1|S2|G|1771

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7XNX|1|S2|G|1759
7XNX|1|S2|G|1760
7XNX|1|S2|U|1761
7XNX|1|S2|G|1771
7XNX|1|S2|C|1772
7XNX|1|S2|G|1764
7XNX|1|S2|C|1765
7XNX|1|S2|C|1766
7XNX|1|S2|C|1767
7XNX|1|S2|A|1768
7XNX|1|S2|C|1769
7XNX|1|S2|G|1770
7XNX|1|S2|G|1771
*
7XNX|1|S2|C|1772

Current chains

Chain S2

18S rRNA

Nearby chains