HL_7XNX_125

3D structure

PDB id

7XNX (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UUGGGGCCGAAACGAUCUCA

Length

20 nucleotides

Bulged bases

7XNX|1|L1|U|1757, 7XNX|1|L1|A|1765, 7XNX|1|L1|A|1766, 7XNX|1|L1|A|1767, 7XNX|1|L1|G|1769

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7XNX|1|L1|U|1756
7XNX|1|L1|U|1757
7XNX|1|L1|G|1758
7XNX|1|L1|G|1759
7XNX|1|L1|G|1760
7XNX|1|L1|G|1761
7XNX|1|L1|C|1762
7XNX|1|L1|C|1763
7XNX|1|L1|G|1764
7XNX|1|L1|A|1765
7XNX|1|L1|A|1766
7XNX|1|L1|A|1767
7XNX|1|L1|C|1768
7XNX|1|L1|G|1769
7XNX|1|L1|A|1770
7XNX|1|L1|U|1771
7XNX|1|L1|C|1772
7XNX|1|L1|U|1773
7XNX|1|L1|C|1774
7XNX|1|L1|A|1775

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LD

60S ribosomal protein L5

Chain LI

Ribosomal protein L10 isoform A

Chain LJ

60S ribosomal protein L11

Chain SP

40S ribosomal protein S15

Chain SS

40S ribosomal protein S18