HL_7XNX_127
3D structure
- PDB id
- 7XNX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GGUGUAGAAUAAGUGGGAGGCCCCCGGCGCCCCCCCGGUGUCCCCGCGAGGGGCCCGGGGCGGGGUCCGCCGGCCCUGCGGGCCGCCGGUGAAAUACCACUAC
- Length
- 103 nucleotides
- Bulged bases
- 7XNX|1|L1|G|3956, 7XNX|1|L1|G|3961, 7XNX|1|L1|A|3962, 7XNX|1|L1|A|3966, 7XNX|1|L1|G|3969, 7XNX|1|L1|G|3970, 7XNX|1|L1|C|3978, 7XNX|1|L1|C|3979, 7XNX|1|L1|G|3980, 7XNX|1|L1|G|3981, 7XNX|1|L1|C|3982, 7XNX|1|L1|G|3983, 7XNX|1|L1|C|3984, 7XNX|1|L1|C|3985, 7XNX|1|L1|C|3986, 7XNX|1|L1|C|3987, 7XNX|1|L1|C|3988, 7XNX|1|L1|C|3989, 7XNX|1|L1|C|3990, 7XNX|1|L1|G|3991, 7XNX|1|L1|G|3992, 7XNX|1|L1|U|3993, 7XNX|1|L1|G|3994, 7XNX|1|L1|U|3995, 7XNX|1|L1|C|3996, 7XNX|1|L1|C|3997, 7XNX|1|L1|C|3998, 7XNX|1|L1|C|3999, 7XNX|1|L1|G|4000, 7XNX|1|L1|C|4001, 7XNX|1|L1|G|4002, 7XNX|1|L1|A|4003, 7XNX|1|L1|G|4004, 7XNX|1|L1|G|4005, 7XNX|1|L1|G|4006, 7XNX|1|L1|G|4007, 7XNX|1|L1|C|4008, 7XNX|1|L1|C|4009, 7XNX|1|L1|C|4010, 7XNX|1|L1|G|4011, 7XNX|1|L1|G|4012, 7XNX|1|L1|G|4013, 7XNX|1|L1|G|4014, 7XNX|1|L1|C|4015, 7XNX|1|L1|G|4016, 7XNX|1|L1|G|4017, 7XNX|1|L1|G|4018, 7XNX|1|L1|G|4019, 7XNX|1|L1|U|4020, 7XNX|1|L1|C|4021, 7XNX|1|L1|C|4022, 7XNX|1|L1|G|4023, 7XNX|1|L1|C|4024, 7XNX|1|L1|C|4025, 7XNX|1|L1|G|4026, 7XNX|1|L1|G|4027, 7XNX|1|L1|C|4028, 7XNX|1|L1|C|4029, 7XNX|1|L1|C|4030, 7XNX|1|L1|U|4031, 7XNX|1|L1|G|4032, 7XNX|1|L1|C|4033, 7XNX|1|L1|G|4034, 7XNX|1|L1|G|4035, 7XNX|1|L1|G|4036, 7XNX|1|L1|C|4037, 7XNX|1|L1|C|4038, 7XNX|1|L1|G|4042, 7XNX|1|L1|U|4044, 7XNX|1|L1|G|4045, 7XNX|1|L1|A|4047, 7XNX|1|L1|U|4049, 7XNX|1|L1|A|4053, 7XNX|1|L1|C|4054
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7XNX|1|L1|G|3955
7XNX|1|L1|G|3956
7XNX|1|L1|U|3957
7XNX|1|L1|G|3958
7XNX|1|L1|U|3959
7XNX|1|L1|A|3960
7XNX|1|L1|G|3961
7XNX|1|L1|A|3962
7XNX|1|L1|A|3963
7XNX|1|L1|U|3964
7XNX|1|L1|A|3965
7XNX|1|L1|A|3966
7XNX|1|L1|G|3967
7XNX|1|L1|U|3968
7XNX|1|L1|G|3969
7XNX|1|L1|G|3970
7XNX|1|L1|G|3971
7XNX|1|L1|A|3972
7XNX|1|L1|G|3973
7XNX|1|L1|G|3974
7XNX|1|L1|C|3975
7XNX|1|L1|C|3976
7XNX|1|L1|C|3977
7XNX|1|L1|C|3978
7XNX|1|L1|C|3979
7XNX|1|L1|G|3980
7XNX|1|L1|G|3981
7XNX|1|L1|C|3982
7XNX|1|L1|G|3983
7XNX|1|L1|C|3984
7XNX|1|L1|C|3985
7XNX|1|L1|C|3986
7XNX|1|L1|C|3987
7XNX|1|L1|C|3988
7XNX|1|L1|C|3989
7XNX|1|L1|C|3990
7XNX|1|L1|G|3991
7XNX|1|L1|G|3992
7XNX|1|L1|U|3993
7XNX|1|L1|G|3994
7XNX|1|L1|U|3995
7XNX|1|L1|C|3996
7XNX|1|L1|C|3997
7XNX|1|L1|C|3998
7XNX|1|L1|C|3999
7XNX|1|L1|G|4000
7XNX|1|L1|C|4001
7XNX|1|L1|G|4002
7XNX|1|L1|A|4003
7XNX|1|L1|G|4004
7XNX|1|L1|G|4005
7XNX|1|L1|G|4006
7XNX|1|L1|G|4007
7XNX|1|L1|C|4008
7XNX|1|L1|C|4009
7XNX|1|L1|C|4010
7XNX|1|L1|G|4011
7XNX|1|L1|G|4012
7XNX|1|L1|G|4013
7XNX|1|L1|G|4014
7XNX|1|L1|C|4015
7XNX|1|L1|G|4016
7XNX|1|L1|G|4017
7XNX|1|L1|G|4018
7XNX|1|L1|G|4019
7XNX|1|L1|U|4020
7XNX|1|L1|C|4021
7XNX|1|L1|C|4022
7XNX|1|L1|G|4023
7XNX|1|L1|C|4024
7XNX|1|L1|C|4025
7XNX|1|L1|G|4026
7XNX|1|L1|G|4027
7XNX|1|L1|C|4028
7XNX|1|L1|C|4029
7XNX|1|L1|C|4030
7XNX|1|L1|U|4031
7XNX|1|L1|G|4032
7XNX|1|L1|C|4033
7XNX|1|L1|G|4034
7XNX|1|L1|G|4035
7XNX|1|L1|G|4036
7XNX|1|L1|C|4037
7XNX|1|L1|C|4038
7XNX|1|L1|G|4039
7XNX|1|L1|C|4040
7XNX|1|L1|C|4041
7XNX|1|L1|G|4042
7XNX|1|L1|G|4043
7XNX|1|L1|U|4044
7XNX|1|L1|G|4045
7XNX|1|L1|A|4046
7XNX|1|L1|A|4047
7XNX|1|L1|A|4048
7XNX|1|L1|U|4049
7XNX|1|L1|A|4050
7XNX|1|L1|C|4051
7XNX|1|L1|C|4052
7XNX|1|L1|A|4053
7XNX|1|L1|C|4054
7XNX|1|L1|U|4055
7XNX|1|L1|A|4056
7XNX|1|L1|C|4057
Current chains
- Chain L1
- 28S rRNA
Nearby chains
- Chain CC
- Transfer RNA; tRNA
Coloring options: