HL_7XNX_130

3D structure

PDB id

7XNX (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CCCCCCGUGG

Length

10 nucleotides

Bulged bases

7XNX|1|S2|C|324, 7XNX|1|S2|C|325, 7XNX|1|S2|C|326

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7XNX|1|S2|C|321
7XNX|1|S2|C|322
7XNX|1|S2|C|323
7XNX|1|S2|C|324
7XNX|1|S2|C|325
7XNX|1|S2|C|326
7XNX|1|S2|G|327
7XNX|1|S2|U|328
7XNX|1|S2|G|329
7XNX|1|S2|G|330

Current chains

Chain S2

18S rRNA

Nearby chains

Chain LW

60S ribosomal protein L24

Chain SG

40S ribosomal protein S6