HL_7Y41_010

3D structure

PDB id

7Y41 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Log Phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

UCUACCUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7Y41_010 not in the Motif Atlas

Geometric match to HL_2JLT_002

Geometric discrepancy: 0.3209

The information below is about HL_2JLT_002

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_52651.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

29

Unit IDs

7Y41|1|A|U|337
7Y41|1|A|C|338
7Y41|1|A|U|339
7Y41|1|A|A|340
7Y41|1|A|C|341
7Y41|1|A|C|342
7Y41|1|A|U|343
7Y41|1|A|G|344

Current chains

Chain A

23S ribosomal RNA

Nearby chains