HL_7Y41_022

3D structure

PDB id

7Y41 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Log Phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

UGAAUAG

Length

7 nucleotides

Bulged bases

7Y41|1|A|U|739

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7Y41_022 not in the Motif Atlas

Homologous match to HL_7RQB_021

Geometric discrepancy: 0.1907

The information below is about HL_7RQB_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

7Y41|1|A|U|735
7Y41|1|A|G|736
7Y41|1|A|A|737
7Y41|1|A|A|738
7Y41|1|A|U|739
7Y41|1|A|A|740
7Y41|1|A|G|741

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L15

Chain c

50S ribosomal protein L33 1

Chain e

50S ribosomal protein L35