HL_7Y41_029

3D structure

PDB id

7Y41 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Log Phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GGAUAAGC

Length

8 nucleotides

Bulged bases

7Y41|1|A|U|1075, 7Y41|1|A|G|1078

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7Y41_029 not in the Motif Atlas

Homologous match to HL_7A0S_026

Geometric discrepancy: 0.177

The information below is about HL_7A0S_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

7Y41|1|A|G|1072
7Y41|1|A|G|1073
7Y41|1|A|A|1074
7Y41|1|A|U|1075
7Y41|1|A|A|1076
7Y41|1|A|A|1077
7Y41|1|A|G|1078
7Y41|1|A|C|1079

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal subunit bL37

Chain N

50S ribosomal protein L16