HL_7Y41_038

3D structure

PDB id

7Y41 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Log Phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GUUGAUAUUC

Length

10 nucleotides

Bulged bases

7Y41|1|A|U|1511, 7Y41|1|A|U|1512

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7Y41_038 not in the Motif Atlas

Homologous match to HL_4WF9_035

Geometric discrepancy: 0.1185

The information below is about HL_4WF9_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

7Y41|1|A|G|1504
7Y41|1|A|U|1505
7Y41|1|A|U|1506
7Y41|1|A|G|1507
7Y41|1|A|A|1508
7Y41|1|A|U|1509
7Y41|1|A|A|1510
7Y41|1|A|U|1511
7Y41|1|A|U|1512
7Y41|1|A|C|1513

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain U

50S ribosomal protein L23