HL_7Y41_057

3D structure

PDB id

7Y41 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Log Phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

7Y41|1|A|G|2474

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7Y41_057 not in the Motif Atlas

Homologous match to HL_4WF9_049

Geometric discrepancy: 0.0954

The information below is about HL_4WF9_049

Detailed Annotation

LSU P loop

Broad Annotation

LSU P loop

Motif group

HL_11974.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

7Y41|1|A|C|2472
7Y41|1|A|U|2473
7Y41|1|A|G|2474
7Y41|1|A|G|2475
7Y41|1|A|G|2476
7Y41|1|A|G|2477
7Y41|1|A|C|2478
7Y41|1|A|G|2479
7Y41|1|A|G|2480

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L16

Chain X

50S ribosomal protein L27