HL_7Y7E_034
3D structure
- PDB id
- 7Y7E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Bacterial Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.41 Å
Loop
- Sequence
- G(5MU)(PSU)CG(1MA)UUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 5MU, PSU, 1MA
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7Y7E_034 not in the Motif Atlas
- Homologous match to HL_1IL2_003
- Geometric discrepancy: 0.1035
- The information below is about HL_1IL2_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.8
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 140
Unit IDs
7Y7E|1|V|G|52
7Y7E|1|V|5MU|53
7Y7E|1|V|PSU|54
7Y7E|1|V|C|55
7Y7E|1|V|G|56
7Y7E|1|V|1MA|57
7Y7E|1|V|U|58
7Y7E|1|V|U|59
7Y7E|1|V|C|60
Current chains
- Chain V
- A-site tRNA-Asp
Nearby chains
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
- Chain l
- 50S ribosomal protein L16
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