HL_7Y7F_046

3D structure

PDB id

7Y7F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Asp(ManQ34) and mRNA(GAC)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.43 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

7Y7F|1|a|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7Y7F_046 not in the Motif Atlas

Homologous match to HL_5J7L_142

Geometric discrepancy: 0.0956

The information below is about HL_5J7L_142

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

7Y7F|1|a|C|305
7Y7F|1|a|U|306
7Y7F|1|a|G|307
7Y7F|1|a|G|308
7Y7F|1|a|A|309
7Y7F|1|a|A|310
7Y7F|1|a|A|311
7Y7F|1|a|G|312

Current chains

Chain a

23S rRNA

Nearby chains

Chain t

50S ribosomal protein L24