HL_7YLA_009

3D structure

PDB id

7YLA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 50S-HflX complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.52 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

7YLA|1|I|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7YLA_009 not in the Motif Atlas

Homologous match to HL_5J7L_142

Geometric discrepancy: 0.0992

The information below is about HL_5J7L_142

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

7YLA|1|I|C|305
7YLA|1|I|U|306
7YLA|1|I|G|307
7YLA|1|I|G|308
7YLA|1|I|A|309
7YLA|1|I|A|310
7YLA|1|I|A|311
7YLA|1|I|G|312

Current chains

Chain I

Escherichia coli strain K-12 substr. MG1655_TMP32XR1 chromosome, complete genome

Nearby chains

Chain c

50S ribosomal protein L24