HL_7YLA_013

3D structure

PDB id

7YLA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 50S-HflX complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.52 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

7YLA|1|I|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7YLA_013 not in the Motif Atlas

Homologous match to HL_5J7L_146

Geometric discrepancy: 0.0928

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7YLA|1|I|G|410
7YLA|1|I|G|411
7YLA|1|I|A|412
7YLA|1|I|C|413
7YLA|1|I|C|414
7YLA|1|I|A|415
7YLA|1|I|U|416
7YLA|1|I|C|417

Current chains

Chain I

Escherichia coli strain K-12 substr. MG1655_TMP32XR1 chromosome, complete genome

Nearby chains

Chain T

50S ribosomal protein L15