HL_7YLA_018

3D structure

PDB id

7YLA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 50S-HflX complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.52 Å

Loop

Sequence

CGAAUAG

Length

7 nucleotides

Bulged bases

7YLA|1|I|A|613, 7YLA|1|I|U|615

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7YLA_018 not in the Motif Atlas

Homologous match to HL_5J7L_151

Geometric discrepancy: 0.113

The information below is about HL_5J7L_151

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

3

Unit IDs

7YLA|1|I|C|611
7YLA|1|I|G|612
7YLA|1|I|A|613
7YLA|1|I|A|614
7YLA|1|I|U|615
7YLA|1|I|A|616
7YLA|1|I|G|617

Current chains

Chain I

Escherichia coli strain K-12 substr. MG1655_TMP32XR1 chromosome, complete genome

Nearby chains

Chain M

50S ribosomal protein L4