HL_7YLA_053

3D structure

PDB id

7YLA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 50S-HflX complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.52 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

7YLA|1|I|G|2250

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7YLA_053 not in the Motif Atlas

Homologous match to HL_4WF9_049

Geometric discrepancy: 0.0917

The information below is about HL_4WF9_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

7YLA|1|I|C|2248
7YLA|1|I|U|2249
7YLA|1|I|G|2250
7YLA|1|I|G|2251
7YLA|1|I|G|2252
7YLA|1|I|G|2253
7YLA|1|I|C|2254
7YLA|1|I|G|2255
7YLA|1|I|G|2256

Current chains

Chain I

Escherichia coli strain K-12 substr. MG1655_TMP32XR1 chromosome, complete genome

Nearby chains

Chain 6

GTPase HflX

Chain U

50S ribosomal protein L16

Chain e

50S ribosomal protein L27