HL_7YLA_060

3D structure

PDB id

7YLA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 50S-HflX complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.52 Å

Loop

Sequence

AGUUCAUAU

Length

9 nucleotides

Bulged bases

7YLA|1|I|U|2473

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7YLA_060 not in the Motif Atlas

Homologous match to HL_5J7L_193

Geometric discrepancy: 0.2775

The information below is about HL_5J7L_193

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32735.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7YLA|1|I|A|2471
7YLA|1|I|G|2472
7YLA|1|I|U|2473
7YLA|1|I|U|2474
7YLA|1|I|C|2475
7YLA|1|I|A|2476
7YLA|1|I|U|2477
7YLA|1|I|A|2478
7YLA|1|I|U|2479

Current chains

Chain I

Escherichia coli strain K-12 substr. MG1655_TMP32XR1 chromosome, complete genome

Nearby chains

Chain 6

GTPase HflX

Chain O

50S ribosomal protein L6

Chain m

50S ribosomal protein L36