HL_7YR6_002

3D structure

PDB id

7YR6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Pseudomonas aeruginosa RsmZ RNA in complex with two RsmA protein dimers

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

GAAGGAUC

Length

8 nucleotides

Bulged bases

7YR6|1|A|G|28

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7YR6_002 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.2837

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.2

Basepair signature

cWW-cWW

Number of instances in this motif group

3

Unit IDs

7YR6|1|A|G|24
7YR6|1|A|A|25
7YR6|1|A|A|26
7YR6|1|A|G|27
7YR6|1|A|G|28
7YR6|1|A|A|29
7YR6|1|A|U|30
7YR6|1|A|C|31

Current chains

Chain A

RsmZ RNA

Nearby chains