HL_7YSE_001

3D structure

PDB id

7YSE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of E. coli hetertetrameric GlyRS in complex with tRNA

Experimental method

X-RAY DIFFRACTION

Resolution

2.907 Å

Loop

Sequence

CAGGGUAGA*G

Length

10 nucleotides

Bulged bases

7YSE|1|E|G|18, 7YSE|1|E|G|19, 7YSE|1|E|U|20

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7YSE_001 not in the Motif Atlas

Homologous match to HL_7MRL_001

Geometric discrepancy: 0.1576

The information below is about HL_7MRL_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20490.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

13

Unit IDs

7YSE|1|E|C|13
7YSE|1|E|A|14
7YSE|1|E|G|15
7YSE|1|E|G|18
7YSE|1|E|G|19
7YSE|1|E|U|20
7YSE|1|E|A|21
7YSE|1|E|G|22
7YSE|1|E|A|21
*
7YSE|1|E|G|22

Current chains

Chain E

RNA (76-MER)

Nearby chains

Chain C

Glycine--tRNA ligase beta subunit