HL_7YSE_005
3D structure
- PDB id
- 7YSE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of E. coli hetertetrameric GlyRS in complex with tRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.907 Å
Loop
- Sequence
- GUUCGAGUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7YSE_005 not in the Motif Atlas
- Homologous match to HL_7EQJ_006
- Geometric discrepancy: 0.1822
- The information below is about HL_7EQJ_006
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.9
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
7YSE|1|F|G|53
7YSE|1|F|U|54
7YSE|1|F|U|55
7YSE|1|F|C|56
7YSE|1|F|G|57
7YSE|1|F|A|58
7YSE|1|F|G|59
7YSE|1|F|U|60
7YSE|1|F|C|61
Current chains
- Chain F
- RNA (76-MER)
Nearby chains
- Chain D
- Glycine--tRNA ligase beta subunit
Coloring options: