HL_7Z4D_005
3D structure
- PDB id
- 7Z4D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of SpCas9 bound to a 10 nucleotide complementary DNA substrate
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CUAG
- Length
- 4 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7Z4D_005 not in the Motif Atlas
- Geometric match to HL_7Z4D_002
- Geometric discrepancy: 0.0185
- The information below is about HL_7Z4D_002
- Detailed Annotation
- Mini UNCG
- Broad Annotation
- No text annotation
- Motif group
- HL_48778.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 51
Unit IDs
7Z4D|1|F|C|55
7Z4D|1|F|U|56
7Z4D|1|F|A|57
7Z4D|1|F|G|58
Current chains
- Chain F
- sgRNA
Nearby chains
- Chain E
- CRISPR-associated endonuclease Cas9/Csn1
Coloring options: