HL_7Z4J_002

3D structure

PDB id

7Z4J (explore in PDB, NAKB, or RNA 3D Hub)

Description

SpCas9 bound to 18-nucleotide complementary DNA substrate in the catalytic state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.99 Å

Loop

Sequence

CUAG

Length

4 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7Z4J_002 not in the Motif Atlas

Geometric match to HL_5U30_001

Geometric discrepancy: 0.0875

The information below is about HL_5U30_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.4

Basepair signature

cWW-F

Number of instances in this motif group

48

Unit IDs

7Z4J|1|A|C|55
7Z4J|1|A|U|56
7Z4J|1|A|A|57
7Z4J|1|A|G|58

Current chains

Chain A

sgRNA

Nearby chains

Chain B

CRISPR-associated endonuclease Cas9/Csn1