HL_7ZJX_001

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAUUUA

Length

6 nucleotides

Bulged bases

7ZJX|1|I|A|111, 7ZJX|1|I|U|112, 7ZJX|1|I|U|114

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZJX_001 not in the Motif Atlas

Geometric match to HL_8UIW_004

Geometric discrepancy: 0.2194

The information below is about HL_8UIW_004

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_12626.1

Basepair signature

cWW-F

Number of instances in this motif group

12

Unit IDs

7ZJX|1|I|U|110
7ZJX|1|I|A|111
7ZJX|1|I|U|112
7ZJX|1|I|U|113
7ZJX|1|I|U|114
7ZJX|1|I|A|115

Current chains

Chain I

CrPV IRES

Nearby chains

Chain SM

40S ribosomal protein S3a

Chain SQ

Ribosomal protein S5

Chain SZ

40S ribosomal protein uS11