3D structure

PDB id
7ZJX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome programmed with SECIS and SBP2
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
UCUGAUCG
Length
8 nucleotides
Bulged bases
7ZJX|1|L5|C|210
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7ZJX_007 not in the Motif Atlas
Homologous match to HL_8C3A_005
Geometric discrepancy: 0.3618
The information below is about HL_8C3A_005
Detailed Annotation
T-loop with 2 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_58705.1
Basepair signature
cWW-tWH-F-F-F
Number of instances in this motif group
23

Unit IDs

7ZJX|1|L5|U|204
7ZJX|1|L5|C|205
7ZJX|1|L5|U|206
7ZJX|1|L5|G|207
7ZJX|1|L5|A|208
7ZJX|1|L5|U|209
7ZJX|1|L5|C|210
7ZJX|1|L5|G|211

Current chains

Chain L5
28S rRNA

Nearby chains

Chain Lb
Ribosomal protein L26
Chain Lh
Ribosomal protein L32

Coloring options:


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