HL_7ZJX_030

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAAACG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZJX_030 not in the Motif Atlas

Geometric match to HL_4WSM_210

Geometric discrepancy: 0.365

The information below is about HL_4WSM_210

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59735.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7ZJX|1|L5|C|1702
7ZJX|1|L5|G|1703
7ZJX|1|L5|A|1704
7ZJX|1|L5|A|1705
7ZJX|1|L5|A|1706
7ZJX|1|L5|C|1707
7ZJX|1|L5|G|1708

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Sa

40S ribosomal protein S15

Chain Sd

40S ribosomal protein S18