HL_7ZJX_037

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGCGGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZJX_037 not in the Motif Atlas

Homologous match to HL_8C3A_030

Geometric discrepancy: 0.0897

The information below is about HL_8C3A_030

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7ZJX|1|L5|C|2160
7ZJX|1|L5|G|2161
7ZJX|1|L5|C|2162
7ZJX|1|L5|G|2163
7ZJX|1|L5|G|2164
7ZJX|1|L5|G|2165

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Lh

Ribosomal protein L32

Chain Ls

60S ribosomal protein eL28