HL_7ZJX_038

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

ACGAGAACU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZJX_038 not in the Motif Atlas

Homologous match to HL_8C3A_031

Geometric discrepancy: 0.1593

The information below is about HL_8C3A_031

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

7ZJX|1|L5|A|2219
7ZJX|1|L5|C|2220
7ZJX|1|L5|G|2221
7ZJX|1|L5|A|2222
7ZJX|1|L5|G|2223
7ZJX|1|L5|A|2224
7ZJX|1|L5|A|2225
7ZJX|1|L5|C|2226
7ZJX|1|L5|U|2227

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LS

60S ribosomal protein uL22

Chain LU

60S ribosomal protein L19

Chain Lg

60S ribosomal protein L31