HL_7ZJX_043

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUCAGAUCC

Length

10 nucleotides

Bulged bases

7ZJX|1|L5|U|2373, 7ZJX|1|L5|C|2374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZJX_043 not in the Motif Atlas

Homologous match to HL_8C3A_035

Geometric discrepancy: 0.1361

The information below is about HL_8C3A_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7ZJX|1|L5|G|2366
7ZJX|1|L5|U|2367
7ZJX|1|L5|U|2368
7ZJX|1|L5|C|2369
7ZJX|1|L5|A|2370
7ZJX|1|L5|G|2371
7ZJX|1|L5|A|2372
7ZJX|1|L5|U|2373
7ZJX|1|L5|C|2374
7ZJX|1|L5|C|2375

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LU

60S ribosomal protein L19

Chain La

Ribosomal_L23eN domain-containing protein

Chain Lj

60S ribosomal protein L34