HL_7ZJX_045

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGUAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZJX_045 not in the Motif Atlas

Homologous match to HL_8C3A_036

Geometric discrepancy: 0.1076

The information below is about HL_8C3A_036

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7ZJX|1|L5|G|2421
7ZJX|1|L5|G|2422
7ZJX|1|L5|U|2423
7ZJX|1|L5|A|2424
7ZJX|1|L5|A|2425
7ZJX|1|L5|C|2426

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Lc

60S ribosomal protein L27

Chain Lj

60S ribosomal protein L34