HL_7ZJX_052

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUC(OMG)G

Length

6 nucleotides

Bulged bases

7ZJX|1|L5|U|2717

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZJX_052 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.1132

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

7ZJX|1|L5|C|2715
7ZJX|1|L5|U|2716
7ZJX|1|L5|U|2717
7ZJX|1|L5|C|2718
7ZJX|1|L5|OMG|2719
7ZJX|1|L5|G|2720

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Lr

60S ribosomal protein eL43

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain Sl

60S ribosomal protein L41