3D structure

PDB id
7ZJX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome programmed with SECIS and SBP2
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GA(A2M)GAAAU(PSU)C
Length
10 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: A2M, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7ZJX_057 not in the Motif Atlas
Geometric match to HL_8KAL_008
Geometric discrepancy: 0.2587
The information below is about HL_8KAL_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_75293.1
Basepair signature
cWW-F-F-F-F-F-F-F-F
Number of instances in this motif group
15

Unit IDs

7ZJX|1|L5|G|3454
7ZJX|1|L5|A|3455
7ZJX|1|L5|A2M|3456
7ZJX|1|L5|G|3457
7ZJX|1|L5|A|3458
7ZJX|1|L5|A|3459
7ZJX|1|L5|A|3460
7ZJX|1|L5|U|3461
7ZJX|1|L5|PSU|3462
7ZJX|1|L5|C|3463

Current chains

Chain L5
28S rRNA

Nearby chains

Chain Ll
60S ribosomal protein L36
Chain Lq
60S ribosomal protein eL42
Chain Lx
Ribosomal protein

Coloring options:


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