HL_7ZJX_060

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

7ZJX|1|L5|A|3608, 7ZJX|1|L5|A|3609, 7ZJX|1|L5|C|3610

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZJX_060 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.1081

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

7ZJX|1|L5|G|3605
7ZJX|1|L5|G|3606
7ZJX|1|L5|G|3607
7ZJX|1|L5|A|3608
7ZJX|1|L5|A|3609
7ZJX|1|L5|C|3610
7ZJX|1|L5|G|3611
7ZJX|1|L5|G|3612
7ZJX|1|L5|G|3613
7ZJX|1|L5|C|3614

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

60S ribosomal protein uL3

Chain LR

60S ribosomal protein uL13

Chain Lh

Ribosomal protein L32