HL_7ZJX_068

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZJX_068 not in the Motif Atlas

Homologous match to HL_8C3A_060

Geometric discrepancy: 0.1219

The information below is about HL_8C3A_060

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7ZJX|1|L5|U|4067
7ZJX|1|L5|G|4068
7ZJX|1|L5|A|4069
7ZJX|1|L5|A|4070
7ZJX|1|L5|A|4071
7ZJX|1|L5|G|4072

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LG

Ribosomal_L18_c domain-containing protein

Chain LW

60S ribosomal protein L21

Chain Lq

60S ribosomal protein eL42