HL_7ZJX_072

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

U(OMU)(OMG)(PSU)UCA

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU, OMG, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZJX_072 not in the Motif Atlas

Homologous match to HL_8C3A_064

Geometric discrepancy: 0.328

The information below is about HL_8C3A_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36430.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7ZJX|1|L5|U|4243
7ZJX|1|L5|OMU|4244
7ZJX|1|L5|OMG|4245
7ZJX|1|L5|PSU|4246
7ZJX|1|L5|U|4247
7ZJX|1|L5|C|4248
7ZJX|1|L5|A|4249

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

60S ribosomal protein uL3