HL_7ZJX_077

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGGAAAGGGG

Length

10 nucleotides

Bulged bases

7ZJX|1|L5|A|4649, 7ZJX|1|L5|A|4650, 7ZJX|1|L5|G|4653

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZJX_077 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.3303

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.2

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

7ZJX|1|L5|C|4645
7ZJX|1|L5|G|4646
7ZJX|1|L5|G|4647
7ZJX|1|L5|A|4648
7ZJX|1|L5|A|4649
7ZJX|1|L5|A|4650
7ZJX|1|L5|G|4651
7ZJX|1|L5|G|4652
7ZJX|1|L5|G|4653
7ZJX|1|L5|G|4654

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

60S ribosomal protein uL3

Chain LR

60S ribosomal protein uL13