HL_7ZJX_078

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

7ZJX|1|L5|U|4715

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZJX_078 not in the Motif Atlas

Homologous match to HL_8C3A_071

Geometric discrepancy: 0.1113

The information below is about HL_8C3A_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

7ZJX|1|L5|G|4714
7ZJX|1|L5|U|4715
7ZJX|1|L5|A|4716
7ZJX|1|L5|G|4717
7ZJX|1|L5|A|4718
7ZJX|1|L5|C|4719
7ZJX|1|L5|G|4720
7ZJX|1|L5|A|4721
7ZJX|1|L5|C|4722

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

60S ribosomal protein uL3

Chain LS

60S ribosomal protein uL22

Chain Lg

60S ribosomal protein L31