HL_7ZJX_097

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGACCCG

Length

7 nucleotides

Bulged bases

7ZJX|1|S2|C|503, 7ZJX|1|S2|C|504

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZJX_097 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.156

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.2

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

7ZJX|1|S2|C|499
7ZJX|1|S2|G|500
7ZJX|1|S2|A|501
7ZJX|1|S2|C|502
7ZJX|1|S2|C|503
7ZJX|1|S2|C|504
7ZJX|1|S2|G|505

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SP

40S ribosomal protein S4

Chain Sj

40S ribosomal protein S24