HL_7ZJX_103
3D structure
- PDB id
- 7ZJX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome programmed with SECIS and SBP2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UG(PSU)UCAAAG
- Length
- 9 nucleotides
- Bulged bases
- 7ZJX|1|S2|G|822
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7ZJX_103 not in the Motif Atlas
- Geometric match to HL_4V88_203
- Geometric discrepancy: 0.2643
- The information below is about HL_4V88_203
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_47383.2
- Basepair signature
- cWW-F-F-cWW-F-F
- Number of instances in this motif group
- 11
Unit IDs
7ZJX|1|S2|U|821
7ZJX|1|S2|G|822
7ZJX|1|S2|PSU|823
7ZJX|1|S2|U|824
7ZJX|1|S2|C|825
7ZJX|1|S2|A|826
7ZJX|1|S2|A|827
7ZJX|1|S2|A|828
7ZJX|1|S2|G|829
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SP
- 40S ribosomal protein S4
- Chain SU
- 40S ribosomal protein S9
- Chain Sj
- 40S ribosomal protein S24
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