HL_7ZJX_104

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCGAG

Length

5 nucleotides

Bulged bases

7ZJX|1|S2|G|837

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZJX_104 not in the Motif Atlas

Geometric match to HL_5J7L_143

Geometric discrepancy: 0.3334

The information below is about HL_5J7L_143

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

7ZJX|1|S2|C|835
7ZJX|1|S2|C|836
7ZJX|1|S2|G|837
7ZJX|1|S2|A|838
7ZJX|1|S2|G|839

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SP

40S ribosomal protein S4

Chain Sj

40S ribosomal protein S24