HL_7ZJX_119

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAUUGCAAUUAU(PSU)C

Length

14 nucleotides

Bulged bases

7ZJX|1|S2|A|1624

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7ZJX|1|S2|G|1614
7ZJX|1|S2|A|1615
7ZJX|1|S2|U|1616
7ZJX|1|S2|U|1617
7ZJX|1|S2|G|1618
7ZJX|1|S2|C|1619
7ZJX|1|S2|A|1620
7ZJX|1|S2|A|1621
7ZJX|1|S2|U|1622
7ZJX|1|S2|U|1623
7ZJX|1|S2|A|1624
7ZJX|1|S2|U|1625
7ZJX|1|S2|PSU|1626
7ZJX|1|S2|C|1627

Current chains

Chain S2

18S rRNA

Nearby chains

Chain B

Selenocysteine insertion sequence-binding protein 2

Chain SH

40S ribosomal protein S29

Chain Sa

40S ribosomal protein S15

Chain Sd

40S ribosomal protein S18

Chain Se

40S Ribosomal protein eS19