HL_7ZJX_122

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUG(MA6)(MA6)C

Length

6 nucleotides

Bulged bases

7ZJX|1|S2|G|1850

QA status

Modified nucleotides: MA6

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZJX_122 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.1361

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.2

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

7ZJX|1|S2|G|1848
7ZJX|1|S2|U|1849
7ZJX|1|S2|G|1850
7ZJX|1|S2|MA6|1851
7ZJX|1|S2|MA6|1852
7ZJX|1|S2|C|1853

Current chains

Chain S2

18S rRNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain Sl

60S ribosomal protein L41